PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g08980
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family S1Fa-like
Protein Properties Length: 76aa    MW: 8166.92 Da    PI: 10.5312
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g08980genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA131.42.4e-41876270
       S1FA  2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
               ++a++eakGlnPGlivllv+g +l+vflv+n +lyvyaqknlPP+kkkPvskkklkreklkqGv+vPGe
  Tp5g08980  8 GKAAAEAKGLNPGLIVLLVIGLPLVVFLVANCVLYVYAQKNLPPKKKKPVSKKKLKREKLKQGVPVPGE 76
               57899***************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046897.6E-361276IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MDGEDFAGKA AAEAKGLNPG LIVLLVIGLP LVVFLVANCV LYVYAQKNLP PKKKKPVSKK  60
KLKREKLKQG VPVPGE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3701764e-88AF370176.1 Arabidopsis thaliana unknown protein (At3g53370) mRNA, complete cds.
GenBankAY0591364e-88AY059136.1 Arabidopsis thaliana unknown protein (At3g53370) mRNA, complete cds.
GenBankAY0888454e-88AY088845.1 Arabidopsis thaliana clone 97045 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013600217.14e-25PREDICTED: DNA-binding protein S1FA1
RefseqXP_013730236.14e-25PREDICTED: DNA-binding protein S1FA1-like
SwissprotQ423375e-21S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLA0A078J2Z04e-25A0A078J2Z0_BRANA; BnaCnng30990D protein
STRINGBra006994.1-P2e-23(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28232769